Canoco 5 supports advanced users as well

Advanced users can combine multiple methods in a single analysis, including generalized linear models to correlate scores etc.

The above snapshot shows the first page of the Analysis Setup Wizard for a customized analysis, where you define individual analysis steps and optionally add specialized data handling for individual steps, with the help of so-called helpers. For standard analyses, such advanced work is not needed, but it gives you power and flexibility if you are an expert user of ordination methods.